Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| HNSC | rs6814921 | chr4:70575272 | A/C | 1.18E-5 | 410 | 16.35 | 15.1 | 0.47 | KM Plot |
| HNSC | rs6819445 | chr4:70574973 | T/A | 1.18E-5 | 410 | 16.35 | 15.1 | 0.47 | KM Plot |
| HNSC | rs683265 | chr6:74340733 | T/C | 5.81E-5 | 411 | 17.13 | 13.12 | 10.3 | KM Plot |
| HNSC | rs683267 | chr6:74340737 | T/A | 5.81E-5 | 411 | 17.13 | 13.12 | 10.3 | KM Plot |
| HNSC | rs6838737 | chr4:70575506 | C/T | 1.18E-5 | 410 | 16.35 | 15.1 | 0.47 | KM Plot |
| HNSC | rs685491 | chr6:74341221 | C/A | 5.81E-5 | 411 | 17.13 | 13.12 | 10.3 | KM Plot |
| HNSC | rs687210 | chr6:74341589 | C/A | 5.81E-5 | 411 | 17.13 | 13.12 | 10.3 | KM Plot |
| HNSC | rs6924112 | chr6:155583620 | G/C | 6.84E-5 | 412 | 16.62 | 18.6 | 12.83 | KM Plot |
| HNSC | rs7109196 | chr11:113206464 | A/C | 2.39E-5 | 405 | 17.37 | 15.3 | 11.58 | KM Plot |
| HNSC | rs7114970 | chr11:34985107 | G/T | 1.41E-5 | 412 | 16.33 | 16.3 | 9.2 | KM Plot |
| HNSC | rs7115217 | chr11:34985327 | C/G | 2.44E-5 | 412 | 9.2 | 16.43 | 16.3 | KM Plot |
| HNSC | rs7134710 | chr12:120888510 | C/A | 5.74E-5 | 405 | 16.43 | 17.35 | 6.17 | KM Plot |
| HNSC | rs7191463 | chr16:72029056 | G/A | 3.06E-6 | 395 | 17.25 | 16.73 | 12.03 | KM Plot |
| HNSC | rs7191717 | chr16:72029303 | C/T | 3.45E-6 | 398 | 17.25 | 16.25 | 11.87 | KM Plot |
| HNSC | rs7195072 | chr16:72027579 | C/G | 4.4E-6 | 402 | 17.07 | 17.6 | 12.03 | KM Plot |